rliger - Linked Inference of Genomic Experimental Relationships
Uses an extension of nonnegative matrix factorization to identify shared and dataset-specific factors. See Welch J, Kozareva V, et al (2019) <doi:10.1016/j.cell.2019.05.006>, and Liu J, Gao C, Sodicoff J, et al (2020) <doi:10.1038/s41596-020-0391-8> for more details.
Last updated 3 months ago
nonnegative-matrix-factorizationsingle-cellopenblascpp
10.77 score 408 stars 1 dependents 334 scripts 1.3k downloadscytosignal - What the Package Does (One Line, Title Case)
What the package does (one paragraph).
Last updated 2 days ago
openblascpp
6.11 score 17 stars 6 scripts
CytoSimplex - Simplex Visualization of Cell Fate Similarity in Single-Cell Data
Create simplex plots to visualize the similarity between single-cells and selected clusters in a 1-/2-/3-simplex space. Velocity information can be added as an additional layer. See Liu J, Wang Y et al (2023) <doi:10.1101/2023.12.07.570655> for more details.
Last updated 2 days ago
openblascpp
4.78 score 4 stars 3 scripts 183 downloadsRcppPlanc - Parallel Low-Rank Approximation with Nonnegativity Constraints
'Rcpp' bindings for 'PLANC', a highly parallel and extensible NMF/NTF (Non-negative Matrix/Tensor Factorization) library. Wraps algorithms described in Kannan et. al (2018) <doi:10.1109/TKDE.2017.2767592> and Eswar et. al (2021) <doi:10.1145/3432185>. Implements algorithms described in Welch et al. (2019) <doi:10.1016/j.cell.2019.05.006>, Gao et al. (2021) <doi:10.1038/s41587-021-00867-x>, and Kriebel & Welch (2022) <doi:10.1038/s41467-022-28431-4>.
Last updated 3 months ago
openblashdf5hwloccpp
4.34 score 4 stars 7 scripts 103 downloads