Package: cytosignal
Title: Location and Dynamics of Ligand-Receptor Signaling at Cellular
        Resolution from Spatial Transcriptomics Data
Version: 0.5.1
Date: 2026-06-15
Type: Package
Authors@R: 
  c(
    person(given = "Jialin", family = "Liu", role = c("aut", "cre"),
           email = "alanliu@umich.edu"),
    person(given = "Yichen", family = "Wang", role = "aut",
           email = "wayichen@umich.edu")
  )
Description: What the package does (one paragraph).
LinkingTo: Rcpp, RcppArmadillo, RcppProgress
Depends: R (>= 4.1.0), methods, stats, utils
Imports: dbscan, RANN, RTriangle, ggplot2, ggrepel, glmnet, Matrix,
        plyr, Rcpp, RcppArmadillo, rlang
Suggests: circlize, cowplot, hdf5r, httr, jsonlite, nebula, patchwork,
        scattermore, stringi, plot3D, png, pheatmap, gprofiler2, knitr,
        Seurat (>= 5.0.0), SeuratObject (>= 5.0.0),
        SingleCellExperiment, SummarizedExperiment, rmarkdown
License: GPL (>= 3)
Encoding: UTF-8
LazyData: true
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
VignetteBuilder: knitr
Remotes: xzhoulab/SPARK
Repository: https://welch-lab.r-universe.dev
Date/Publication: 2026-06-15 23:50:58 UTC
RemoteUrl: https://github.com/welch-lab/cytosignal
RemoteRef: HEAD
RemoteSha: b2c1a3cfda258fa57f6c8c3a92635dfe4b0505a0
NeedsCompilation: yes
Packaged: 2026-06-16 01:01:05 UTC; root
Author: Jialin Liu [aut, cre],
  Yichen Wang [aut]
Maintainer: Jialin Liu <alanliu@umich.edu>