Package: CytoSimplex
Type: Package
Title: Simplex Visualization of Cell Fate Similarity in Single-Cell
        Data
Version: 0.2.0
Date: 2025-04-22
Authors@R: c(
    person(given = 'Yichen', family = 'Wang', email = 'wayichen@umich.edu', 
           role = c('aut', 'cre'), comment = c(ORCID = "0000-0003-4347-5199")),
    person(given = 'Jialin', family = 'Liu', email = 'alanliu@umich.edu', 
           role = c('aut'), comment = c(ORCID = "0000-0002-9984-7695")),
    person(given = 'Joshua', family = 'Welch', email = 'welchjd@umich.edu', 
           role = c('cph'))
  )
Maintainer: Yichen Wang <wayichen@umich.edu>
Description: Create simplex plots to visualize the similarity between
        single-cells and selected clusters in a 1-/2-/3-simplex space.
        Velocity information can be added as an additional layer. See
        Liu J, Wang Y et al (2023) <doi:10.1093/bioinformatics/btaf119>
        for more details.
URL: https://welch-lab.github.io/CytoSimplex/,
        https://github.com/welch-lab/CytoSimplex
License: GPL-3
Encoding: UTF-8
LazyData: true
Depends: stats, methods, grDevices, R (>= 3.6)
LinkingTo: Rcpp, RcppArmadillo
biocViews:
Imports: cli, ggplot2, Matrix, plot3D, plotly, RColorBrewer, Rcpp,
        rlang, viridis
Suggests: hdf5r, knitr, magick, patchwork, rmarkdown, Seurat,
        SeuratObject, SingleCellExperiment, SummarizedExperiment,
        testthat (>= 3.0.0)
RoxygenNote: 7.3.2
Config/testthat/edition: 3
VignetteBuilder: knitr
Config/pak/sysreqs: cmake make libicu-dev libuv1-dev libssl-dev
Repository: https://welch-lab.r-universe.dev
Date/Publication: 2025-04-23 14:10:26 UTC
RemoteUrl: https://github.com/welch-lab/CytoSimplex
RemoteRef: HEAD
RemoteSha: d8a252f08ac8067c1426ec85f600c94a9d99c8a0
NeedsCompilation: yes
Packaged: 2026-07-09 07:46:56 UTC; root
Author: Yichen Wang [aut, cre] (ORCID: <https://orcid.org/0000-0003-4347-5199>),
  Jialin Liu [aut] (ORCID: <https://orcid.org/0000-0002-9984-7695>),
  Joshua Welch [cph]